Email: $firstname.$lastname@rice.edu

Address: MS132, 6100 Main St, Houston, TX.

Zhen Cao

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I am a second year Ph.D. student advised by Prof. Luay Nakhleh in CS Department at Rice University.

My research interest is computational biology. More specifically, I am interested in scalable methods for phylogenetic network inference and related problems.

Publications

Computational Biology

  • Empirical Performance of Tree-based Inference of Phylogenetic Network Inference

    Zhen Cao, Jiafan Zhu and Luay Nakhleh
    19th Workshop on Algorithms in Bioinformatics (WABI), 2019
    [PDF] [slides]

  • Practical Aspects of Phylogenetic Network Analysis Using PhyloNet

    Zhen Cao, Xinhao Liu, Huw Ogilvie, Zhi Yan and Luay Nakhleh
    bioRxiv, 2019
    [PDF]

Computer Networking

  • A Low-Latency and Energy-Efficient Neighbor Discovery Algorithm for Wireless Sensor Networks

    Zhaoquan Gu, Zhen Cao, Zhihong Tian, Yuexuan Wang, Xiaojiang Du, Guizani Mohsen
    Sensors, 2020
    [PDF]

  • Panacea: A low-latency, energy-efficient neighbor discovery protocol for wireless sensor networks

    Zhen Cao, Zhaoquan Gu, Yuexuan Wang and Heming Cui
    IEEE Conference Wireless Communications and Networking (WCNC), 2018
    [PDF]

  • How local information improves rendezvous in cognitive radio networks

    Yongqin Fu, Yuexuan Wang, Zhaoquan Gu, Xiaolin Zheng, Tianhao Wei, Zhen Cao, Heming Cui and Francis C.M. Lau
    15th IEEE Communications Society Conference on Sensor and Ad Hoc Communications and Networks (SECON), 2018
    [PDF]

  • Alano: An Efficient Neighbor Discovery Algorithm in an Energy-Restricted Large-Scale Network

    Tong Shen, Yuexuan Wang, Zhaoquan Gu, Dongda Li, Zhen Cao, Heming Cui and Francis CM Lau
    15th IEEE International Conference on Mobile Ad Hoc and Sensor Systems (MASS), 2018
    [PDF]

NLP

  • EDM-JBW: A novel event detection model based on JS-ID′ Forder and Bikmeans with word embedding for news streams

    Pengpeng Zhou, Zhen Cao, Bin Wu, Chunzi Wu and Shuqi Yu
    Journal of computational science, 2018
    [PDF]

  • EMMBTT: A Novel Event Evolution Model Based on TFxIEF and TDC in Tracking News Streams

    Pengpeng Zhou, Bin Wu and Zhen Cao
    IEEE Second International Conference on Data Science in Cyberspace (DSC), 2017
    [PDF]

Talks

  • Empirical Performance of Tree-based Inference of Phylogenetic Networks

    Session of Ligntening Talks, Society of Systematic Biologists, Gainesvile, FL, Jan 2020
    [slides]
  • Phylogenetic network inference with PhyloNet

    Phylogenomics Software Symposium, Gainesvile, FL, Jan 2020
    [slides] [tutorial]

Posters

  • Computational Challenges in Phylogenomics

    Rice University, Houston, TX, Feb 2020
    [poster]
  • Empirical Performance of Tree-based Inference of Phylogenetic Networks

    American Socienty of Human Genetics, Houston, TX, Oct 2019
    [poster]

Misc

Outside of research, I enjoy swimming, running, playing badminton, playing Ping Pong, and baking!